Data sharing
Members of the Cremins lab are committed to freely and publicly sharing data upon publication. Below links are examples of the raw sequencing data, intermediate processed files, and final peak-called lists released to publicly accessible databases such as the 4DN consortium portal or Gene Expression Omnibus database upon publication.

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE172429
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE152721
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE131025
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE129997
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115963
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111170
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114121
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE85185
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95804
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68582
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111170
https://data.4dnucleome.org/publications/ee8db237-9a92-4b72-8292-a66028a95b5b
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE218680
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE190117
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE203654
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220103

Code sharing
We make algorithms available to the public on the version-controlled repositories Github/Bitbucket (https://bitbucket.org/creminslab/).

Loop Calling
https://bitbucket.org/creminslab/cremins_lab_loop_calling_pipeline_11_6_2021

TAD&subTAD Calling
https://bitbucket.org/creminslab/cremins_lab_tadsubtad_calling_pipeline_11_6_2021

Cell type-specific Loop Calling
https://bitbucket.org/creminslab/hic3defdr/src/master/

Short tandem repeat analyses
https://github.com/mhguo1/AD_STR/tree/main
https://github.com/mhguo1/AD_STR/tree/main/test_dbscan

Plasmids
We share plasmids created in our papers via AddGene:
https://www.addgene.org/Jennifer_Phillips-Cremins/